API

Import SpaRCL as:

import SpaRCL as rcl

spatial_reconstruction(adata[, alpha, ...])	Spatial reconstruction of gene expression matrix.
reference_centers(adata, n_centers[, ...])	Select reference centers for mini-batch relational contrastive learning.
run_RCL(adata[, beta, tol_err, n_iters, ...])	Relational Contrastive Learning for spatial transcriptomics.
run_RCL_minibatch(adata[, beta, tol_err, ...])	Mini-batch Relational Contrastive Learning for large-scale spatial transcriptomics.
expression_denoising(adata[, relation_key])	Denoise the gene expression matrix using gene relation matrix.
regulons(adata[, tf_names, ...])	Regulon inference for spatial transcriptomics [Aibar17].
aucell(adata[, auc_threshold, noweights, ...])	Compute the regulon activity AUCell matrix [Aibar17].